species:   Clros
pid:       PID1835
parent:    cro-mir-1
paralog:   
locus:     CADEHS020000002.2:2259339-2259416
matures:   ['UAGAAUUCGGGGUAGAAU', '']
srr:       ERR5950791
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram CADEHS020000002.2:2259339-2259416

5576 out of bounds
514 alignments
442 proper strand
435 stranded perfect matches

****************                                          ********************
UACCCCGAAUUCUAUGGCGGCAAUGUGAAUGUUAGGAUCGCGGCAGGUUAGUUGCCGCCAUAGAAUUCGGGGUAGAAU
((((((((((((((((((((((((.....((((........)))).....))))))))))))))))))))))))....
------------------------------------------------------------UAGAAUUCGGGGUAGAAU l=18 a=375 c
------------------------------------------------------------------------------ l=0 a=0 c*
------------------------------------------------------------UAGAAUUCGGGGUAGAAU l=18 a=375 ma
------------------------------------------------------------------------------ l=0 a=0 ma*

UACCCCGAAUUCUAUGGCG----------------------------------------------------------- l=19 a=1 
-------------------------UGAAUGUUAGGAUCGCGGC---------------------------------- l=19 a=1 
----------------------------------------------------UGCCGCCAUAGAAUUCGGG------- l=19 a=1 
-------------------------------------------------------CGCCAUAGAAUUCGGGGUAGA-- l=21 a=1 
-----------------------------------------------------------AUAGAAUUCGGGGUAGAAU l=19 a=4 
------------------------------------------------------------UAGAAUUCGGGGU----- l=13 a=3 
------------------------------------------------------------UAGAAUUCGGGGUA---- l=14 a=28 
------------------------------------------------------------UAGAAUUCGGGGUAG--- l=15 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGA-- l=16 a=7 
------------------------------------------------------------UAGAAUUCGGGGUAGAA- l=17 a=12 
------------------------------------------------------------UAGAAUUCGGGGUAGAc- l=17 a=2 
------------------------------------------------------------UAGAAUUCGGGGUAGAAU l=18 a=375 (c,ma)
------------------------------------------------------------UcGAAUUCGGGGUAGAAU l=18 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAAa l=18 a=1 
------------------------------------------------------------cAGAAUUCGGGGUAGAAU l=18 a=1 
------------------------------------------------------------UAGAAUUCGGGaUAGAAU l=18 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAAg l=18 a=1 
--------------------------------------------------------------GAAUUCGGGGUAGAAU l=16 a=1 

mb-00110
ax-0011100
ku-11
ss-101011111010
fn-111
